Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR98764.1Bacteriohemerythrin. (129 aa)    
Predicted Functional Partners:
slmA
Nucleoid occlusion factor SlmA.
       0.601
fliM
Flagellar motor switch protein FliM.
    
   0.436
cheC
CheY-P phosphatase CheC.
  
 
   0.436
AQR99760.1
Flavodoxin.
  
  
 0.426
fprA_2
Nitric oxide reductase.
  
  
 0.426
fprA1
Flavo-diiron protein FprA1.
  
  
 0.426
fprA_3
Nitric oxide reductase.
  
  
 0.426
AQS01942.1
Flavodoxin.
  
  
 0.426
norV
Anaerobic nitric oxide reductase flavorubredoxin.
  
  
 0.426
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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