STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuA_1High-affinity zinc uptake system binding-protein ZnuA precursor. (300 aa)    
Predicted Functional Partners:
znuB
High-affinity zinc uptake system membrane protein ZnuB.
 
  
 0.931
znuC
High-affinity zinc uptake system ATP-binding protein ZnuC.
 
  
 0.909
AQR99985.1
Putative GTP-binding protein YjiA.
  
  
 0.565
rpsN1
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.541
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.540
AQR98393.1
Hypothetical protein.
  
   
 0.534
AQR99447.1
Hypothetical protein.
  
    0.501
purL
Phosphoribosylformylglycinamidine synthase.
     
 0.489
yjiA
Putative GTP-binding protein YjiA.
  
  
 0.487
AQR99937.1
CobW/HypB/UreG, nucleotide-binding domain.
  
  
 0.487
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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