znuA_1 protein (Clostridium saccharobutylicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

znuA_1

High-affinity zinc uptake system binding-protein ZnuA precursor. (300 aa)

Predicted Functional Partners:

znuB

0.933

znuC

0.919

rpsN1

0.587

AQR99985.1

0.571

rpmB

0.561

purL

0.538

AQR98393.1

0.531

AQR99447.1

0.520

yjiA

0.494

AQR99937.1

0.494

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR98393.1	AQR99447.1	CSACC_01490	CSACC_12560	Hypothetical protein.	Hypothetical protein.	0.669
AQR98393.1	znuA_1	CSACC_01490	CSACC_05690	Hypothetical protein.	High-affinity zinc uptake system binding-protein ZnuA precursor.	0.531
AQR99447.1	AQR98393.1	CSACC_12560	CSACC_01490	Hypothetical protein.	Hypothetical protein.	0.669
AQR99447.1	znuA_1	CSACC_12560	CSACC_05690	Hypothetical protein.	High-affinity zinc uptake system binding-protein ZnuA precursor.	0.520
AQR99937.1	rpmB	CSACC_17460	CSACC_13710	CobW/HypB/UreG, nucleotide-binding domain.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.533
AQR99937.1	rpsN1	CSACC_17460	CSACC_02140	CobW/HypB/UreG, nucleotide-binding domain.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.631
AQR99937.1	yjiA	CSACC_17460	CSACC_17450	CobW/HypB/UreG, nucleotide-binding domain.	Putative GTP-binding protein YjiA.	0.631
AQR99937.1	znuA_1	CSACC_17460	CSACC_05690	CobW/HypB/UreG, nucleotide-binding domain.	High-affinity zinc uptake system binding-protein ZnuA precursor.	0.494
AQR99985.1	rpmB	CSACC_17940	CSACC_13710	Putative GTP-binding protein YjiA.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.556
AQR99985.1	rpsN1	CSACC_17940	CSACC_02140	Putative GTP-binding protein YjiA.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.655
AQR99985.1	znuA_1	CSACC_17940	CSACC_05690	Putative GTP-binding protein YjiA.	High-affinity zinc uptake system binding-protein ZnuA precursor.	0.571
purL	znuA_1	CSACC_12910	CSACC_05690	Phosphoribosylformylglycinamidine synthase.	High-affinity zinc uptake system binding-protein ZnuA precursor.	0.538
rpmB	AQR99937.1	CSACC_13710	CSACC_17460	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	CobW/HypB/UreG, nucleotide-binding domain.	0.533
rpmB	AQR99985.1	CSACC_13710	CSACC_17940	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	Putative GTP-binding protein YjiA.	0.556
rpmB	rpsN1	CSACC_13710	CSACC_02140	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.990
rpmB	yjiA	CSACC_13710	CSACC_17450	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	Putative GTP-binding protein YjiA.	0.533
rpmB	znuA_1	CSACC_13710	CSACC_05690	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	High-affinity zinc uptake system binding-protein ZnuA precursor.	0.561
rpsN1	AQR99937.1	CSACC_02140	CSACC_17460	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	CobW/HypB/UreG, nucleotide-binding domain.	0.631
rpsN1	AQR99985.1	CSACC_02140	CSACC_17940	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	Putative GTP-binding protein YjiA.	0.655
rpsN1	rpmB	CSACC_02140	CSACC_13710	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.990