Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CfgPutative AgrB-like protein. (200 aa)    
Predicted Functional Partners:
agrB_2
Accessory protein regulator protein B.
  
  
  0.936
citS
Sensor protein CitS.
    
 0.918
agrB_1
Accessory protein regulator protein B.
  
  
  0.916
cusS
Sensor kinase CusS.
    
  0.903
AQR98888.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.726
AQS00572.1
Hypothetical protein.
  
     0.666
AQS00573.1
Hypothetical protein.
  
     0.661
AQS02630.1
MazG-like family protein.
  
     0.615
nisC
Nisin biosynthesis protein NisC.
   
  
 0.558
mutS_3-2
MutS domain III; Belongs to the DNA mismatch repair MutS family.
  
     0.533
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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