STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recF_2DNA replication and repair protein RecF. (911 aa)    
Predicted Functional Partners:
yhaO
Putative metallophosphoesterase YhaO.
 
 
 0.950
znuA_2
High-affinity zinc uptake system binding-protein ZnuA precursor; Belongs to the bacterial solute-binding protein 9 family.
       0.539
AQR98901.1
CYTH domain protein.
 
     0.493
MreD
Rod shape-determining protein MreD.
  
 
   0.489
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
     0.479
AQS02241.1
Hypothetical protein.
  
     0.442
AQR98793.1
Sporulation inhibitor KapD.
 
     0.441
AQS00573.1
Hypothetical protein.
  
     0.438
AQS00572.1
Hypothetical protein.
  
     0.437
bepA
Beta-barrel assembly-enhancing protease.
  
    0.429
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.