Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR98794.1CBS domain protein. (149 aa)    
Predicted Functional Partners:
AQR98793.1
Sporulation inhibitor KapD.
 
     0.714
addA
ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase.
 
    0.652
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.634
AQS01734.1
ABC-2 family transporter protein.
  
     0.432
AQS02245.1
Hypothetical protein.
  
     0.427
mutS_1
DNA mismatch repair protein MutS.
       0.414
AQS01732.1
ABC-2 family transporter protein.
  
     0.409
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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