STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
penAPenicillin-binding protein 2B. (1004 aa)    
Predicted Functional Partners:
mreC
Cell shape-determining protein MreC precursor; Involved in formation and maintenance of cell shape.
 
 
 0.987
mreB_2
Rod shape-determining protein MreB.
 
 
 0.968
MreD
Rod shape-determining protein MreD.
 
  
 0.946
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.945
mrdB_1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.931
pbpA
Penicillin-binding protein A.
  
  
0.930
mrdB_2
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.929
spoVD_2
Stage V sporulation protein D.
 
  
0.920
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 
 0.856
mreB_1
Rod shape-determining protein MreB.
 
 
 0.830
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.