STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98818.1Peptidase family M50. (283 aa)    
Predicted Functional Partners:
spoIIID
Stage III sporulation protein D.
   
  
 0.653
AQR98838.1
Hypothetical protein.
 
     0.585
spoIIM
Stage II sporulation protein M.
 
  
 0.560
AQS00870.1
Stage III sporulation protein SpoAB.
  
  
 0.545
AQS01262.1
Hypothetical protein.
  
     0.541
spoIIE
Stage II sporulation protein E.
  
  
 0.523
spoIVB
SpoIVB peptidase precursor.
  
   
 0.517
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
   
 0.514
AQR98817.1
Hypothetical protein.
       0.501
AQR99645.1
Hypothetical protein.
  
    0.501
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.