STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98825.1ABC-2 family transporter protein. (254 aa)    
Predicted Functional Partners:
AQR98824.1
ABC-2 family transporter protein.
 
  
  0.996
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
 0.988
AQS02224.1
ABC-2 family transporter protein.
 
  
  0.927
todS_1
Sensor histidine kinase TodS.
 
     0.898
yxlF_10
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.893
srrA_2
Transcriptional regulatory protein SrrA.
 
     0.688
AQS01734.1
ABC-2 family transporter protein.
  
     0.649
AQS01732.1
ABC-2 family transporter protein.
  
     0.612
yxlF_4
Putative ABC transporter ATP-binding protein YxlF.
 
  
 0.534
AQS00194.1
Outer membrane-specific lipoprotein transporter subunit LolC.
  
     0.530
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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