Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yxlF_1Putative ABC transporter ATP-binding protein YxlF. (301 aa)    
Predicted Functional Partners:
AQR98828.1
ABC-2 family transporter protein.
  
 
 0.912
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
   
0.732
ytrF_1
ABC transporter permease YtrF precursor.
 
  
 0.686
baeS_2
Signal transduction histidine-protein kinase BaeS.
 
     0.630
AQS01732.1
ABC-2 family transporter protein.
 
 
 0.608
AQS01734.1
ABC-2 family transporter protein.
 
 
 0.608
regX3_1
Sensory transduction protein regX3.
     
 0.531
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.460
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.460
AQS01823.1
ABC-2 family transporter protein.
 
  
 0.458
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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