Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lolD_2Lipoprotein-releasing system ATP-binding protein LolD. (227 aa)    
Predicted Functional Partners:
ytrF_1
ABC transporter permease YtrF precursor.
 
 
 0.964
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 0.924
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 0.896
AQS00191.1
FtsX-like permease family protein.
 
 
 0.808
AQS00194.1
Outer membrane-specific lipoprotein transporter subunit LolC.
 
 
 0.805
ytrF_2
ABC transporter permease YtrF precursor.
 
 
 0.791
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
   
0.732
yxdM
ABC transporter permease protein YxdM.
  
 
 0.627
AQR98567.1
FtsX-like permease family protein.
  
 
 0.625
AQR98568.1
FtsX-like permease family protein.
  
 
 0.625
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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