STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrF_1ABC transporter permease YtrF precursor. (878 aa)    
Predicted Functional Partners:
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.974
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.931
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.887
lolD_4
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.887
AQR99731.1
Hypothetical protein.
   
    0.843
kdpD_1
Sensor protein KdpD.
 
   
 0.796
macB_5
Macrolide export ATP-binding/permease protein MacB.
  
 
0.785
AQS00278.1
Hypothetical protein.
 
   
 0.767
regX3_4
Sensory transduction protein regX3.
 
   
 0.743
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
  
 
 0.726
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.