Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
baeS_2Signal transduction histidine-protein kinase BaeS. (303 aa)    
Predicted Functional Partners:
regX3_1
Sensory transduction protein regX3.
 
 
 0.830
todS_2
Sensor histidine kinase TodS.
  
 
 0.757
tmoS_2
Sensor histidine kinase TmoS.
  
 
 0.745
tmoS_1
Sensor histidine kinase TmoS.
  
 
 0.744
regX3_2
Sensory transduction protein regX3.
 
 
 0.736
CheY1
Chemotaxis protein CheY homolog.
  
 
 0.729
phoR_4
Alkaline phosphatase synthesis sensor protein PhoR.
  
 
 
 0.723
todS_4
Sensor histidine kinase TodS.
 
 
 
 0.719
phoR_2
Alkaline phosphatase synthesis sensor protein PhoR.
  
 
 
 0.716
divL
Sensor protein DivL.
  
 
 0.712
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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