STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98832.1Hypothetical protein. (1411 aa)    
Predicted Functional Partners:
AQS00647.1
Hypothetical protein.
  
    0.680
AQR99705.1
Bacterial SH3 domain protein.
 
   
 0.630
AQR98739.1
CAAX amino terminal protease self- immunity.
  
     0.623
AQR98581.1
Hypothetical protein.
  
     0.586
AQS00578.1
Hypothetical protein.
 
     0.575
AQS00895.1
YGGT family protein.
  
     0.551
AQS02325.1
Hypothetical protein.
  
     0.489
polC_1
DNA polymerase III PolC-type.
 
     0.486
AQR99647.1
Putative amidase domain protein.
  
     0.459
AQR99648.1
ST7 protein.
  
     0.443
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.