STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_1D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family. (411 aa)    
Predicted Functional Partners:
dacF
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
  
 
0.926
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
  
  
 
0.923
pbpF_2
Penicillin-binding protein 1F.
  
 
 0.911
pbpF_1
Penicillin-binding protein 1F.
     
 0.910
comEA
ComE operon protein 1.
     
 0.687
fabG_3
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
   
    0.528
spoVD_2
Stage V sporulation protein D.
 
  
 0.518
spmA
Spore maturation protein A.
  
  
 0.499
spmB
Spore maturation protein B.
  
  
 0.487
AQR98848.1
Hypothetical protein.
       0.485
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.