STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98852.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
AQS02555.1
Hypothetical protein.
     0.785
AQR99160.1
Hypothetical protein.
  
     0.764
hopD2_2
Effector protein hopD2.
  
     0.510
AQR98851.1
Phage integrase family protein.
       0.508
AQR98393.1
Hypothetical protein.
  
     0.498
AQS00781.1
Hypothetical protein.
  
     0.497
AQS00657.1
NADPH-dependent FMN reductase.
  
     0.486
AQS01166.1
Hypothetical protein.
  
     0.483
lspA
Lipoprotein signal peptidase.
  
     0.480
AQR98853.1
Putative transposase.
       0.456
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.