Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR98902.137-kD nucleoid-associated bacterial protein. (344 aa)    
Predicted Functional Partners:
AQS02630.1
MazG-like family protein.
  
     0.745
AQR98334.1
Hypothetical protein.
  
    0.710
AQR98689.1
LysM domain protein.
  
     0.686
AQR98901.1
CYTH domain protein.
 
     0.678
AQS00956.1
Tetratricopeptide repeat protein.
  
     0.662
AQR98307.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.646
AQR99416.1
Tetratricopeptide repeat protein.
  
     0.633
AQR99419.1
Hypothetical protein.
  
     0.625
AQR98485.1
Tetratricopeptide repeat protein.
  
     0.592
cotI_4
Spore coat protein I.
  
     0.592
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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