Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yycF_1Transcriptional regulatory protein YycF. (229 aa)    
Predicted Functional Partners:
tcrY
Putative sensor histidine kinase TcrY.
 
 
 0.970
pleD_4
Response regulator PleD.
 
 
  
 0.892
AQS00084.1
Putative histidine kinase sensor domain protein.
  
 
 0.859
cph2_1
Phytochrome-like protein cph2.
 
  
 0.847
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.833
yycG_5
Sensor histidine kinase YycG.
  
 
 0.820
phoR_10
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.818
phoR_6
Alkaline phosphatase synthesis sensor protein PhoR.
 
 
 0.811
phoR_9
Alkaline phosphatase synthesis sensor protein PhoR.
  
 
 0.811
tmoS_2
Sensor histidine kinase TmoS.
 
 
 0.807
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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