STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccM_1Putative electron transport protein YccM. (523 aa)    
Predicted Functional Partners:
apbE_2
Thiamine biosynthesis lipoprotein ApbE precursor; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
  
 0.777
rsxB_3
Electron transport complex subunit RsxB.
  
 
 0.675
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.669
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.669
urdA
Urocanate reductase precursor.
 
  
 0.572
cdr_1
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
     
 0.465
dmsA
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.463
yccM_2
Putative electron transport protein YccM.
 
     0.450
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta.
  
  
 0.442
dmsB
Anaerobic dimethyl sulfoxide reductase chain B.
  
  
 0.442
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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