STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98925.1Subtilase family protein. (603 aa)    
Predicted Functional Partners:
AQR98926.1
Subtilase family protein.
 
    
0.825
AQS01211.1
Putative peptidoglycan binding domain protein.
     0.786
ssb
Single-stranded DNA-binding protein.
  
     0.654
prsA
Foldase protein PrsA precursor.
   
 
 0.627
cbf2
Putative peptidyl-prolyl cis-trans isomerase Cbf2 precursor.
   
 
 0.627
AQR99898.1
Hypothetical protein.
  
     0.564
AQS00921.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.564
AQR98689.1
LysM domain protein.
  
     0.557
cotI_2
Spore coat protein I.
  
     0.479
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
  
 0.450
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.