Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
glnQ_1Glutamine transport ATP-binding protein GlnQ. (243 aa)    
Predicted Functional Partners:
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
 0.998
glnH_1
Glutamine-binding periplasmic protein precursor.
 
 0.996
glnH_2
Glutamine-binding periplasmic protein precursor.
 
 0.988
artQ_1
Arginine transport system permease protein ArtQ.
 
 0.939
artQ_2
Arginine transport system permease protein ArtQ.
 
 0.938
glnP_1
Glutamine transport system permease protein GlnP.
 
 
 0.928
glnP_2
Putative glutamine ABC transporter permease protein GlnP.
 
 
 0.928
tcyB
L-cystine transport system permease protein TcyB.
 
 
 0.927
fliY
Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.851
artJ_2
ABC transporter arginine-binding protein 1 precursor.
 
 
 0.847
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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