STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsB_1D-ribose-binding periplasmic protein precursor. (314 aa)    
Predicted Functional Partners:
ytfT
Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.
 0.973
yjfF
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 0.973
araG
Arabinose import ATP-binding protein AraG.
 
 0.968
ytfQ
ABC transporter periplasmic-binding protein YtfQ precursor.
 
  
 
0.957
rbsC_1
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.879
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.875
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
    
 0.872
lsrC
Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.866
lsrD
Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.
 
 0.864
rbsA_1
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.852
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.