Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytfTInner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family. (346 aa)    
Predicted Functional Partners:
araG
Arabinose import ATP-binding protein AraG.
 
 0.996
yjfF
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.986
ytfQ
ABC transporter periplasmic-binding protein YtfQ precursor.
 
 0.974
rbsB_1
D-ribose-binding periplasmic protein precursor.
 
 0.973
rbsA_2
Ribose import ATP-binding protein RbsA.
 
 
 0.896
rbsA_1
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.894
lsrA
Autoinducer 2 import ATP-binding protein LsrA.
 
 
 0.885
mglB_7
D-galactose-binding periplasmic protein precursor.
 
 
 0.874
mglB_5
D-galactose-binding periplasmic protein precursor.
 
 
 0.859
rbsB_2
D-ribose-binding periplasmic protein precursor.
 
 0.841
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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