Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araRArabinose metabolism transcriptional repressor. (357 aa)    
Predicted Functional Partners:
tycC
Tyrocidine synthase 3.
    
 
 0.729
srfAA
Surfactin synthase subunit 1.
    
 
 0.729
csbC_1
Putative metabolite transport protein CsbC; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
   
 0.724
fucK
L-fuculokinase.
 
 
 
 0.680
xylB
Xylulose kinase.
 
 
 
 0.661
ulaF_1
L-ribulose-5-phosphate 4-epimerase UlaF.
 
   
 0.632
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.610
ptsH
Phosphocarrier protein HPr.
   
 
 0.568
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.512
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.512
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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