STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhaM_13'-5' exoribonuclease YhaM. (231 aa)    
Predicted Functional Partners:
AQR98559.1
Putative RNA polymerase sigma factor SigI.
 
   
 0.531
AQS00934.1
HIRAN domain protein.
  
     0.523
AQS01954.1
Glutathionylspermidine synthase.
  
     0.519
AQR98964.1
Hypothetical protein.
 
     0.509
AQR99421.1
O-antigen ligase.
  
     0.499
AQS01262.1
Hypothetical protein.
  
    0.498
AQS00044.1
Transposase DDE domain protein.
  
     0.496
AQS00659.1
Transposase DDE domain protein.
  
     0.496
AQS01661.1
Transposase DDE domain protein.
  
     0.496
AQS02325.1
Hypothetical protein.
  
     0.487
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.