Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR98971.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
AQR98976.1
Hypothetical protein.
 
   
 0.863
AQR98996.1
Hypothetical protein.
 
   
 0.793
AQS01336.1
Hypothetical protein.
 
   
 0.788
AQS01814.1
Pentapeptide repeat protein.
 
     0.788
AQR98998.1
Hypothetical protein.
 
  
 0.787
AQR99003.1
Hypothetical protein.
 
     0.780
AQR99019.1
Hypothetical protein.
 
     0.780
AQS01342.1
Hypothetical protein.
 
     0.780
AQR99007.1
Hypothetical protein.
  
   
 0.777
AQS01818.1
Hypothetical protein.
 
   
 0.764
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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