Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pipB2_1Secreted effector protein pipB2. (367 aa)    
Predicted Functional Partners:
AQR98976.1
Hypothetical protein.
 
     0.905
AQR98975.1
Hypothetical protein.
       0.821
AQR98973.1
Hypothetical protein.
 
     0.794
wapA_1
tRNA nuclease WapA precursor.
 
     0.720
AQR98971.1
Hypothetical protein.
 
     0.693
AQR98978.1
Hypothetical protein.
       0.608
todS_6
Sensor histidine kinase TodS.
 
 
 0.539
AQR99020.1
Phage late control protein Gpd.
 
     0.534
AQS01819.1
Phage late control protein Gpd.
 
     0.533
AQR99019.1
Hypothetical protein.
 
     0.514
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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