STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98976.1Hypothetical protein. (257 aa)    
Predicted Functional Partners:
AQR98973.1
Hypothetical protein.
 
   
 0.906
pipB2_1
Secreted effector protein pipB2.
 
     0.905
wapA_1
tRNA nuclease WapA precursor.
 
   
 0.866
AQR98971.1
Hypothetical protein.
 
   
 0.863
AQR98975.1
Hypothetical protein.
       0.821
AQS01814.1
Pentapeptide repeat protein.
 
     0.787
AQR99020.1
Phage late control protein Gpd.
 
     0.782
AQS01819.1
Phage late control protein Gpd.
 
     0.782
AQR98996.1
Hypothetical protein.
 
     0.776
AQR98998.1
Hypothetical protein.
 
     0.768
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.