STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98979.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
AQR98980.1
Hypothetical protein.
       0.768
AQR98981.1
Hypothetical protein.
       0.684
AQR98978.1
Hypothetical protein.
       0.480
wapA_1
tRNA nuclease WapA precursor.
      
0.461
trxB_1
Thioredoxin reductase.
    
   0.451
trxA
Thioredoxin; Belongs to the thioredoxin family.
    
   0.451
AQR99471.1
Thioredoxin C-2; Belongs to the thioredoxin family.
    
   0.451
PedC
Hypothetical protein.
    
   0.451
chiA1
Chitinase A1 precursor; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.432
AQR98976.1
Hypothetical protein.
     
 0.423
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.