STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98998.1Hypothetical protein. (620 aa)    
Predicted Functional Partners:
AQR98996.1
Hypothetical protein.
 
 
 0.930
dnaJ_1
Chaperone protein DnaJ.
 
   0.871
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
 0.836
AQR99003.1
Hypothetical protein.
 
     0.831
AQR99007.1
Hypothetical protein.
 
 
 
 0.819
pknB
Serine/threonine-protein kinase PknB.
  
 
 0.800
prkC_3
Serine/threonine-protein kinase PrkC.
  
 
 0.800
AQR98971.1
Hypothetical protein.
 
  
 0.791
AQR98973.1
Hypothetical protein.
 
  
 0.791
AQS01336.1
Hypothetical protein.
 
     0.778
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.