STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99034.1RNA ligase. (267 aa)    
Predicted Functional Partners:
AQR99035.1
HD domain protein.
 
     0.952
ybiA_1
Swarming motility protein YbiA.
 
     0.887
AQS00168.1
Reverse transcriptase.
  
     0.702
ybiA_2
Swarming motility protein YbiA.
  
     0.698
ubiE_5
Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase.
 
 
   0.660
AQS00272.1
Reverse transcriptase.
  
     0.656
AQS00167.1
Hypothetical protein.
 
     0.644
AQS02313.1
Glycosyl transferases group 1.
   
   0.623
AQR99718.1
Glycine/sarcosine N-methyltransferase.
   
   0.613
AQR99998.1
23S rRNA methyltransferase A.
   
   0.613
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.