STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araCArabinose operon regulatory protein. (286 aa)    
Predicted Functional Partners:
rafA
Alpha-galactosidase.
 
   
 0.810
soxS_2
Regulatory protein SoxS.
 
 
 0.708
rob_4
Right origin-binding protein.
 
   
 0.603
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.593
ypdA_1
Sensor histidine kinase YpdA.
 
   
 0.531
rob_3
Right origin-binding protein.
  
     0.515
yehU_1
Putative sensor-like histidine kinase.
 
   
 0.510
XynC2
Enterobactin/ferric enterobactin esterase.
 
     0.427
ytrA_1
HTH-type transcriptional repressor YtrA.
 
  
 0.417
marA_1
Multiple antibiotic resistance protein MarA.
 
 
0.410
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.