Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
agrB_1Accessory protein regulator protein B. (184 aa)    
Predicted Functional Partners:
cusS
Sensor kinase CusS.
 
  
  0.959
citS
Sensor protein CitS.
 
  
 0.934
Cfg
Putative AgrB-like protein.
  
  
  0.916
agrB_2
Accessory protein regulator protein B.
  
  
  0.913
AQS02075.1
Flagellar hook-length control protein FliK.
  
     0.696
AQS02053.1
Hypothetical protein.
  
     0.681
AQS00546.1
Hypothetical protein.
  
   
 0.667
AQR99705.1
Bacterial SH3 domain protein.
  
     0.659
AQR98485.1
Tetratricopeptide repeat protein.
  
     0.624
AQR99067.1
Hypothetical protein.
       0.616
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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