STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cynR_1HTH-type transcriptional regulator CynR. (315 aa)    
Predicted Functional Partners:
apbE_3
Thiamine biosynthesis lipoprotein ApbE precursor.
 
    0.890
urdA
Urocanate reductase precursor.
 
  
 0.878
cynR_2
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.751
cmpR
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.741
cynR_3
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.709
azr
NADPH azoreductase.
 
   
 0.700
cfaD
CFA/I fimbrial subunit D.
  
  
 0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.