STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urdAUrocanate reductase precursor. (807 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.965
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.965
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.943
apbE_3
Thiamine biosynthesis lipoprotein ApbE precursor.
 
  
 0.930
hndD
NADP-reducing hydrogenase subunit HndC.
  
 
 0.911
cynR_1
HTH-type transcriptional regulator CynR.
 
  
 0.871
AQS01576.1
Ferredoxin.
  
 
 0.844
AQS02510.1
Ferredoxin.
  
 
 0.844
AQR98894.1
NADH oxidase.
  
 
 0.819
AQR98897.1
NADH oxidase.
  
 
 0.819
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.