Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR99093.1EcoKI restriction-modification system protein HsdS. (408 aa)    
Predicted Functional Partners:
AQR99094.1
Putative type I restriction enzymeP M protein.
 
 
 0.986
prmC_2
Release factor glutamine methyltransferase.
 
 
 0.945
hsdM
Type I restriction enzyme EcoKI M protein.
 
 
 0.944
HsdM
Putative type I restriction enzymeP M protein.
 
 0.940
hsdR_2
Type-1 restriction enzyme R protein.
 
  
 0.901
hsdR_3
Type I restriction enzyme R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.900
hsdR_1
Type-1 restriction enzyme R protein.
 
 
 0.810
AQR99092.1
Hypothetical protein.
       0.775
AQR98653.1
EcoKI restriction-modification system protein HsdS.
 
   
 0.753
AQR98655.1
EcoKI restriction-modification system protein HsdS.
 
   
 0.618
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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