Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
polA_1DNA polymerase I, thermostable. (392 aa)    
Predicted Functional Partners:
AQR99107.1
Hypothetical protein.
     0.993
AQR99105.1
Hypothetical protein.
 
   
 0.916
AQR99106.1
Hypothetical protein.
 
     0.915
AQR99104.1
Hypothetical protein.
 
   
 0.914
AQR99110.1
Hypothetical protein.
 
     0.893
AQR99099.1
Chromosome segregation protein.
 
 
 0.787
AQR99101.1
Hypothetical protein.
 
     0.763
AQR99102.1
Hypothetical protein.
 
   
 0.715
AQR99109.1
Phage antirepressor protein KilAC domain protein.
 
     0.615
glyQS
glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.606
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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