Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR99110.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
polA_1
DNA polymerase I, thermostable.
 
     0.893
AQR99107.1
Hypothetical protein.
 
     0.887
AQR99104.1
Hypothetical protein.
 
   
 0.879
AQR99105.1
Hypothetical protein.
 
   
 0.877
AQR99106.1
Hypothetical protein.
 
     0.876
AQR99109.1
Phage antirepressor protein KilAC domain protein.
 
     0.869
AQR99099.1
Chromosome segregation protein.
 
 
 0.742
AQR99098.1
Hypothetical protein.
 
     0.713
AQR99101.1
Hypothetical protein.
 
     0.662
AQR99102.1
Hypothetical protein.
 
   
 0.654
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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