Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pknBSerine/threonine-protein kinase PknB. (627 aa)    
Predicted Functional Partners:
stp_2
Serine/threonine phosphatase stp.
 
 
 0.942
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.918
AQR98995.1
FHA domain protein.
   
 
 0.867
stp_1
Serine/threonine phosphatase stp.
 
 
 0.822
AQR98996.1
Hypothetical protein.
   
 
 0.802
AQR98998.1
Hypothetical protein.
  
 
 0.759
AQR99299.1
Hypothetical protein.
  
 
 0.759
AQR99300.1
Hypothetical protein.
  
 
 0.759
AQR99609.1
Hypothetical protein.
  
 
 0.759
AQR99124.1
Hypothetical protein.
       0.752
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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