Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yxlF_3Putative ABC transporter ATP-binding protein YxlF. (292 aa)    
Predicted Functional Partners:
AQR99149.1
Peptidase family M1.
 
 
 
 0.915
AQR99150.1
Hypothetical protein.
  
    0.796
yxdL_2
ABC transporter ATP-binding protein YxdL.
 
   
0.683
bceB_1
Bacitracin export permease protein BceB.
  
  
 0.646
AQS01734.1
ABC-2 family transporter protein.
 
 
 0.631
AQR98828.1
ABC-2 family transporter protein.
  
 
 0.630
AQS01732.1
ABC-2 family transporter protein.
 
 
 0.625
ytrA_2
HTH-type transcriptional repressor YtrA.
  
  
 0.543
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
   0.531
graS_1
Sensor histidine kinase GraS.
   
   0.500
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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