STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_3Putative ABC transporter ATP-binding protein YxlF. (292 aa)    
Predicted Functional Partners:
AQR99149.1
Peptidase family M1.
 
 
 
 0.919
AQR99150.1
Hypothetical protein.
  
    0.807
AQS01734.1
ABC-2 family transporter protein.
 
 
 0.763
AQS01732.1
ABC-2 family transporter protein.
 
 
 0.759
AQR98828.1
ABC-2 family transporter protein.
  
 
 0.734
yxdL_2
ABC transporter ATP-binding protein YxdL.
 
   
0.681
bceB_1
Bacitracin export permease protein BceB.
  
  
 0.650
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
   0.634
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 
   0.630
AQS00422.1
Hypothetical protein.
  
 
 0.605
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.