STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99150.1Hypothetical protein. (236 aa)    
Predicted Functional Partners:
AQR99149.1
Peptidase family M1.
     
 0.861
yxlF_3
Putative ABC transporter ATP-binding protein YxlF.
  
    0.807
AQS01447.1
sigmaW regulon antibacterial.
  
  
 0.713
yxdL_2
ABC transporter ATP-binding protein YxdL.
  
    0.647
bceB_1
Bacitracin export permease protein BceB.
       0.645
AQR99475.1
Hypothetical protein; NfeD-like C-terminal, partner-binding.
  
  
 0.503
graR_1
Response regulator protein GraR.
       0.492
graS_1
Sensor histidine kinase GraS.
       0.492
AQS01964.1
SPFH domain / band 7 family protein.
   
    0.416
hflK
Modulator of FtsH protease HflK.
  
  
 0.410
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.