Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
graR_1Response regulator protein GraR. (223 aa)    
Predicted Functional Partners:
graS_1
Sensor histidine kinase GraS.
 
 
 0.965
AQS00084.1
Putative histidine kinase sensor domain protein.
  
 
 0.859
graS_2
Sensor histidine kinase GraS.
 
 
 0.851
bceB_1
Bacitracin export permease protein BceB.
 
   
 0.804
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
 
 0.783
phoR_9
Alkaline phosphatase synthesis sensor protein PhoR.
  
 
 0.777
todS_2
Sensor histidine kinase TodS.
 
 
 0.776
tmoS_2
Sensor histidine kinase TmoS.
 
 
 0.775
phoR_6
Alkaline phosphatase synthesis sensor protein PhoR.
 
 
 0.764
tmoS_1
Sensor histidine kinase TmoS.
 
 
 0.763
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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