STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lagD_4lactococcin-G-processing and transport ATP-binding protein LagD. (739 aa)    
Predicted Functional Partners:
hlyD
Hemolysin secretion protein D, chromosomal.
 
 
 0.983
AQR98514.1
HlyD family secretion protein.
 
 
 0.926
AQR98372.1
Hypothetical protein.
 
 
 0.911
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
  
  
 
0.901
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
  
  
 
0.901
mdtN_1
Multidrug resistance protein MdtN.
  
 
 0.716
emrK_2
Putative multidrug resistance protein EmrK.
  
 
 0.716
mdtN_2
Multidrug resistance protein MdtN.
  
 
 0.716
mdtA
Multidrug resistance protein MdtA.
  
 
 0.716
AQS01867.1
Putative efflux pump membrane fusion protein.
  
 
 0.716
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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