STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hlyDHemolysin secretion protein D, chromosomal. (389 aa)    
Predicted Functional Partners:
lagD_4
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 0.977
AQR98372.1
Hypothetical protein.
  
  
 
0.923
AQR98514.1
HlyD family secretion protein.
  
  
 
0.923
lagD_3
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 0.907
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 0.903
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 0.901
apxIB
Toxin RTX-I translocation ATP-binding protein.
 
 
 0.796
macB_5
Macrolide export ATP-binding/permease protein MacB.
  
  
 0.576
AQR98522.1
Outer membrane efflux protein.
  
 
 0.572
AQR99241.1
Hypothetical protein.
  
 
 0.572
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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