STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licRPutative licABCH operon regulator. (665 aa)    
Predicted Functional Partners:
licA
Lichenan-specific phosphotransferase enzyme IIA component.
 
  
 0.946
licC
Lichenan permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
  
 0.932
licB_1
Lichenan-specific phosphotransferase enzyme IIB component.
 
  
 0.931
sacX
Negative regulator of SacY activity.
 
 
 0.918
fruA_3
PTS system fructose-specific EIIABC component.
 
  
 0.908
bglF
PTS system beta-glucoside-specific EIIBCA component.
 
 
 0.906
lacE_2
PTS system lactose-specific EIICB component.
 
  
 0.899
ptsG_1
PTS system glucose-specific EIICBA component.
  
 
 0.891
AQR99176.1
Hypothetical protein.
 
     0.834
gatC_2
Galactitol permease IIC component.
 
  
 0.832
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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