STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel5AEndoglucanase 5A; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (624 aa)    
Predicted Functional Partners:
xyl3A
Xylan 1,4-beta-xylosidase precursor.
 
  
 0.933
bglB
Thermostable beta-glucosidase B.
 
  
 0.927
manA_2
Beta-mannanase/endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.767
celS
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 
 0.741
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.713
abfB
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
   
 0.696
xynC
Glucuronoxylanase XynC precursor.
 
   
 0.681
xynD_1
Arabinoxylan arabinofuranohydrolase precursor.
 
   
 0.660
pelL
Pectate lyase L precursor.
 
   
 0.605
bglA_2
Beta-glucanase precursor.
 
   
 0.601
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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