STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99202.1ABC-2 family transporter protein. (243 aa)    
Predicted Functional Partners:
AQR99201.1
Fluoroquinolones export ATP-binding proteinc.
 
  
 0.940
ypdB_1
Transcriptional regulatory protein YpdB.
 
     0.866
bmrR_2
Multidrug-efflux transporter 1 regulator.
  
 
   0.441
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
  
  
 0.425
AQS01739.1
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.413
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 
     0.408
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.