Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
emrK_1Putative multidrug resistance protein EmrK; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (327 aa)    
Predicted Functional Partners:
emrK_2
Putative multidrug resistance protein EmrK.
   
 0.918
mdtC
Multidrug resistance protein MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.907
swrC_2
Swarming motility protein SwrC.
 
 
 0.890
swrC_1
Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.889
macB_5
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.850
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.758
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.750
emrB_1
Multidrug export protein EmrB; Belongs to the major facilitator superfamily.
     
 0.703
AQR99208.1
MarR family protein.
     
 0.662
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.638
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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