STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99215.1Serine-pyruvate aminotransferase. (381 aa)    
Predicted Functional Partners:
pphA
Phosphonopyruvate hydrolase.
 
  
 0.863
hmpT_1
Thiamine precursor transporter HmpT.
 
     0.795
alaS_2
alanine--tRNA ligase.
 
  
 0.607
puuE
4-aminobutyrate aminotransferase PuuE; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.597
SerA
Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.583
AQS02413.1
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
  
 0.571
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.527
fchA
Methenyltetrahydrofolate cyclohydrolase.
  
  
 0.507
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.488
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.488
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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