STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsxB_2Electron transport complex subunit RsxB. (242 aa)    
Predicted Functional Partners:
hydA
Periplasmic hydrogenase large subunit.
 
 
 
 0.673
AQS00362.1
Iron hydrogenase 1.
   
 
 0.642
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.605
lysN_1
2-aminoadipate transaminase.
    
   0.570
lysN_2
2-aminoadipate transaminase.
    
   0.570
lysN_3
2-aminoadipate transaminase.
    
   0.570
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.549
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.549
AQR99833.1
Transcriptional activator FtrB.
 
     0.529
sgcG_2
2-amino-4-deoxychorismate dehydrogenase.
  
     0.478
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.