STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99258.1Calcium-transporting ATPase 1. (839 aa)    
Predicted Functional Partners:
AQR99259.1
ComEC family competence protein.
 
    0.872
AQR99260.1
DNA polymerase III subunit delta.
       0.768
YhiD
Putative Mg(2+) transport ATPase.
  
 
 0.557
SpoVAE
SpoVA protein.
       0.535
clcA
H(+)/Cl(-) exchange transporter ClcA.
  
 
 0.442
AQR98818.1
Peptidase family M50.
 
    0.439
AQS02056.1
Cobalt-dependent inorganic pyrophosphatase.
     
 0.438
adhE_1
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.437
spoVAD_1
Stage V sporulation protein AD.
       0.434
SpoVAC1
SpoVA protein.
       0.426
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.